Basic Information
Locus ID:
jg31611
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Short Name:
NTMC2T2.1
Description:
Synaptotagmin-5-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 3796893 | 3810316 | - | jg31611 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 70,624.16 Da | 31.15 | 96.35 | -0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 510 | 610 | 2.66006E-27 | - |
| CDD | cd00030 | C2 | 335 | 435 | 1.35659E-25 | - |
| Pfam | PF00168 | C2 domain | 331 | 435 | 8.2E-23 | IPR000008 |
| Pfam | PF00168 | C2 domain | 508 | 610 | 4.0E-25 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 139 | 317 | 1.0E-14 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 329 | 461 | 3.87E-29 | IPR035892 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 505 | 627 | 1.79E-32 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 324 | 460 | 2.4E-31 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 489 | 626 | 4.5E-35 | IPR035892 |
| SMART | SM00239 | C2_3c | 332 | 432 | 1.6E-21 | IPR000008 |
| SMART | SM00239 | C2_3c | 509 | 607 | 1.3E-24 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 484 | 608 | 20.385378 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 136 | 318 | 29.915627 | IPR031468 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 312 | 433 | 20.321463 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 551 | 564 | 8.9E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 525 | 537 | 8.9E-6 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 573 | 581 | 8.9E-6 | IPR000008 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05500.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. Encodes a endomembrane-localized synaptotagmin. Synaptotagmin family proteins are calcium sensors that regulate exocytosis in mammalian cells. | 0 |
| RefSeq | XP_011078421.1 | synaptotagmin-5 [Sesamum indicum] | 0 |
| Q8L706 | Synaptotagmin-5 OS=Arabidopsis thaliana OX=3702 GN=SYT5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9TCU4 | synaptotagmin-5 OS=Sesamum indicum OX=4182 GN=LOC105162152 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology