Basic Information
Locus ID:
jg31571
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Glyco_18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 2888070 | 2888827 | - | jg31571 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.80 | 17,683.43 Da | 24.35 | 62.56 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 1 | 147 | 2.4E-28 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 1 | 150 | 1.52E-21 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 54 | 118 | 3.01E-13 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 1 | 147 | 3.2E-43 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 53 | 118 | 3.2E-43 | IPR029070 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 1 | 163 | 23.977798 | IPR001223 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_011084017.2 | chitinase-like protein 3 [Sesamum indicum] | 0 |
| A0A1B1J8Z2 | Class V chitinase CHIT5 OS=Lotus japonicus OX=34305 GN=CHIT5 PE=1 SV=2 | 0 | |
| TrEMBL | A0A022QW38 | GH18 domain-containing protein (Fragment) OS=Erythranthe guttata OX=4155 GN=MIMGU_mgv1a022475mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology