Basic Information
Locus ID:
jg31570
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the glycosyl hydrolase 18 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 2886408 | 2887286 | + | jg31570 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 32,097.87 Da | 35.61 | 82.88 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 30 | 264 | 4.4E-55 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 32 | 263 | 5.33E-60 | IPR017853 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 36 | 253 | 7.8E-78 | - |
| Gene3D | G3DSA:3.10.50.10 | - | 254 | 291 | 7.8E-78 | IPR029070 |
| SMART | SM00636 | 2g34 | 15 | 292 | 1.0E-38 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 14 | 292 | 50.90361 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 125 | 133 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19800.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_011078612.1 | acidic mammalian chitinase-like [Sesamum indicum] | 0 |
| U5N4E3 | Nod factor hydrolase protein 1 OS=Medicago truncatula OX=3880 GN=NFH1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9TDB8 | acidic mammalian chitinase-like OS=Sesamum indicum OX=4182 GN=LOC105162303 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology