Basic Information
Locus ID:
jg31456
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 1681376 | 1682605 | - | jg31456 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.57 | 44,609.72 Da | 69.24 | 70.32 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 134 | 177 | 1.15623E-16 | - |
| Pfam | PF13639 | Ring finger domain | 134 | 177 | 7.1E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 114 | 182 | 5.55E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 109 | 184 | 8.4E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 135 | 176 | 6.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 135 | 177 | 12.076194 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 208 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 389 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 233 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 286 | 329 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 374 | 409 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 285 | 329 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05810.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011069943.1 | RING-H2 finger protein ATL43-like [Sesamum indicum] | 0 |
| Q5EAE9 | RING-H2 finger protein ATL43 OS=Arabidopsis thaliana OX=3702 GN=ATL43 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9SS71 | RING-H2 finger protein ATL43-like OS=Sesamum indicum OX=4182 GN=LOC105155720 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology