Basic Information
Locus ID:
jg31414
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 1288135 | 1289019 | - | jg31414 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.01 | 29,849.68 Da | 60.93 | 57.20 | -0.85 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14369 | zinc-ribbon | 7 | 36 | 1.3E-8 | IPR039525 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 264 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 203 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G56580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011070061.1 | probable E3 ubiquitin-protein ligase RHC1A [Sesamum indicum] | 0 |
| Q94AK4 | E3 ubiquitin-protein ligase RZF1 OS=Arabidopsis thaliana OX=3702 GN=RZF1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9SLW2 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105155802 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology