Basic Information
Locus ID:
jg31310
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Serine threonine-protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr19 | 413307 | 424834 | + | jg31310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.17 | 106,207.40 Da | 47.58 | 75.35 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd06257 | DnaJ | 40 | 92 | 2.3351E-22 | IPR001623 |
| CDD | cd08215 | STKc_Nek | 314 | 569 | 7.09117E-122 | - |
| Pfam | PF00226 | DnaJ domain | 39 | 100 | 3.2E-24 | IPR001623 |
| Pfam | PF00069 | Protein kinase domain | 315 | 568 | 8.3E-66 | IPR000719 |
| SUPERFAMILY | SSF46565 | Chaperone J-domain | 34 | 114 | 7.85E-26 | IPR036869 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 312 | 594 | 7.69E-83 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 390 | 576 | 1.4E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 297 | 389 | 4.6E-23 | - |
| Gene3D | G3DSA:1.10.287.110 | DnaJ domain | 22 | 113 | 2.7E-27 | IPR036869 |
| SMART | SM00271 | dnaj_3 | 37 | 95 | 8.2E-26 | IPR001623 |
| SMART | SM00220 | serkin_6 | 315 | 569 | 9.3E-84 | IPR000719 |
| ProSiteProfiles | PS50076 | dnaJ domain profile. | 38 | 103 | 21.452723 | IPR001623 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 315 | 569 | 47.028778 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 436 | 448 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 321 | 344 | - | IPR017441 |
| PRINTS | PR00625 | DnaJ domain signature | 40 | 58 | 4.6E-19 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 75 | 95 | 4.6E-19 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 95 | 114 | 4.6E-19 | IPR001623 |
| PRINTS | PR00625 | DnaJ domain signature | 58 | 73 | 4.6E-19 | IPR001623 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 592 | 627 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 711 | 761 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 827 | 855 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 30 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 797 | 826 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 228 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 856 | 876 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 708 | 762 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 776 | 881 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 654 | 678 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 590 | 630 | - | - |
| Coils | Coil | Coil | 4 | 31 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G20860.1 | NIMA-related kinase 5. Encodes a member of the NIMA-related serine/threonine kinases (Neks) that have been linked to cell-cycle regulation in fungi and mammals. Plant Neks might be involved in plant development processes. | 0 |
| RefSeq | XP_011078869.1 | serine/threonine-protein kinase Nek6 [Sesamum indicum] | 0 |
| Q9LT35 | Serine/threonine-protein kinase Nek6 OS=Arabidopsis thaliana OX=3702 GN=NEK6 PE=3 SV=1 | 0 | |
| TrEMBL | A5CAJ8 | Protein kinase domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_040411 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg31310, jg33270, jg33271, jg4369 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_4683 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah021697 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_3g061010 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg59256, Sbi_jg63376 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg23516 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00018419 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl23764 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014064, gene:ENSEOMG00000031758 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.3AG0020390, CQ.Regalona.r1.3BG0021270 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30187080 |
| Apiaceae | Apium graveolens | 2 | Ag2G01497, Ag3G01494 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G012110 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103720332, gene-LOC103723827 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3323.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G13581 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT3G12170.1, AT5G06910.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10014343m.g.v1.0, Thhalv10021344m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g10410.v2.2 |
| Brassicaceae | Brassica nigra | 3 | BniB01g052720.2N, BniB03g069000.2N, BniB07g056500.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1107 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1276 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g01500 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0128s00019.v1.0, Dusal.0128s00020.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate08g07360 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 2 | nbisL1-mrna-8462, nbisL1-mrna-8466 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2443 |
| Plantaginaceae | Plantago ovata | 3 | Pov_00006617, Pov_00017495, Pov_00025836 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb3G16270, Lb3G16271 |
| Poaceae | Echinochloa crus-galli | 5 | AH07.710, BH07.840, CH01.1510, CH07.3, CH07.598 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0104990, gene-QOZ80_2BG0158420 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0573240.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_021311 |
| Poaceae | Oryza coarctata | 2 | Oco03G004980, Oco04G004940 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g10220.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G073800 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202138, Pt_Chr0202181 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr06G033190, Chr15G024580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G332400 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG022360, gene_TRIDC6BG029000 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G158600.1, TraesCS6B02G192700.1 ... |
| Poaceae | Zea mays | 4 | Zm00001eb139200_P001, Zm00001eb205970_P003 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-33482, nbis-gene-44081 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g12379, Zma_g15129 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG07.522, evm.TU.LG15.423 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g03300 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.1206, evm.TU.Scaffold_2_RagTag.1143 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-3783, nbisL1-mrna-6416 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-16267 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-18857, nbisL1-mrna-4225 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000009l.546 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00005979 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-10967, nbisL1-mrna-12450 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-13397, nbisL1-mrna-5590 |
| Salicaceae | Populus euphratica | 2 | populus_peu11000, populus_peu26135 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132607500, gene-LOC132633961 |
| Solanaceae | Solanum chilense | 1 | SOLCI003450000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002724 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.6955_chr04_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC06G2415 |
| Zosteraceae | Zostera marina | 7 | Zosma01g41610.v3.1, Zosma01g41650.v3.1, Zosma03g12370.v3.1 ... |