Basic Information
Locus ID:
jg3112
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| ScioBoG_19020_HRSCAF_19106 | 1 | 1146 | - | jg3112 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.99 | 42,967.96 Da | 42.76 | 85.65 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 79 | 210 | 1.05667E-61 | - |
| Pfam | PF16124 | RecQ zinc-binding | 213 | 275 | 2.3E-17 | IPR032284 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 94 | 200 | 7.9E-15 | IPR001650 |
| Pfam | PF09382 | RQC domain | 277 | 381 | 1.5E-32 | IPR018982 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 77 | 323 | 2.52E-61 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 6 | 67 | 1.81E-10 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 211 | 382 | 7.9E-50 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 78 | 210 | 1.8E-40 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 77 | 2.6E-25 | IPR027417 |
| SMART | SM00490 | helicmild6 | 120 | 201 | 7.7E-24 | IPR001650 |
| SMART | SM00956 | RQC_2 | 282 | 381 | 1.1E-37 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 4 | 334 | 5.8E-109 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 92 | 240 | 20.004646 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 1 | 71 | 12.231831 | IPR014001 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_024391774.1 | uncharacterized protein LOC112290058 isoform X2 [Physcomitrium patens] | 0 |
| P15043 | ATP-dependent DNA helicase RecQ OS=Escherichia coli (strain K12) OX=83333 GN=recQ PE=1 SV=5 | 0 | |
| TrEMBL | A0A423PFJ4 | DNA helicase OS=Salinisphaera japonica YTM-1 OX=1209778 GN=SAJA_14200 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology