Basic Information
Locus ID:
jg31023
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 9859641 | 9860969 | + | jg31023 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 49,188.41 Da | 38.12 | 98.55 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 36 | 78 | 2.39658E-26 | - |
| Pfam | PF04564 | U-box domain | 32 | 103 | 2.2E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 127 | 419 | 5.76E-15 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 28 | 108 | 1.02E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 124 | 435 | 2.6E-13 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 109 | 4.7E-30 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 35 | 98 | 8.8E-30 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 31 | 105 | 41.293495 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_011085881.1 | U-box domain-containing protein 21 [Sesamum indicum] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9TWV2 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105167761 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology