Basic Information
Locus ID:
jg30918
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 7640345 | 7641688 | - | jg30918 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.94 | 49,326.63 Da | 38.51 | 100.58 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 34 | 76 | 5.64634E-25 | - |
| Pfam | PF04564 | U-box domain | 31 | 100 | 1.1E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 140 | 423 | 9.46E-17 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 30 | 105 | 4.32E-30 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 119 | 423 | 1.3E-19 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 106 | 8.0E-30 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 33 | 96 | 1.5E-28 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 29 | 103 | 37.887897 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| Coils | Coil | Coil | 411 | 431 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_041013202.1 | U-box domain-containing protein 21-like [Juglans microcarpa x Juglans regia] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5B7BSG5 | RING-type E3 ubiquitin transferase OS=Davidia involucrata OX=16924 GN=Din_041253 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology