Basic Information
Locus ID:
jg30712
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the NPH3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 2611430 | 2615154 | - | jg30712 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 80,093.56 Da | 34.34 | 87.34 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03000 | NPH3 family | 296 | 552 | 2.9E-86 | IPR027356 |
| Pfam | PF00651 | BTB/POZ domain | 113 | 202 | 4.1E-6 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 107 | 202 | 7.46E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 94 | 206 | 6.8E-11 | IPR011333 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 114 | 182 | 9.35131 | IPR000210 |
| ProSiteProfiles | PS51649 | NPH3 domain profile. | 296 | 576 | 85.443886 | IPR027356 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 634 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 621 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 670 | 695 | - | - |
| Coils | Coil | Coil | 617 | 637 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G14820.1 | Phototropic-responsive NPH3 family protein. A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. | 0 |
| RefSeq | XP_011073694.1 | BTB/POZ domain-containing protein NPY4 [Sesamum indicum] | 0 |
| O80970 | Phototropic-responsive NPH3 family protein NPY2 OS=Arabidopsis thaliana OX=3702 GN=NPY2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9H4V2 | BTB/POZ domain-containing protein NPY4 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_14843 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology