Basic Information
Locus ID:
jg30622
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 1625281 | 1629557 | - | jg30622 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.08 | 65,716.99 Da | 61.66 | 75.54 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08368 | LIM | 235 | 309 | 7.30353E-5 | - |
| CDD | cd09396 | LIM_DA1 | 208 | 260 | 1.53961E-30 | - |
| Pfam | PF12315 | Protein DA1 | 356 | 580 | 1.2E-98 | IPR022087 |
| Pfam | PF00412 | LIM domain | 208 | 262 | 6.0E-12 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 234 | 295 | 4.34E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 200 | 233 | 1.6E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 200 | 265 | 1.7E-16 | - |
| SMART | SM00132 | lim_4 | 207 | 259 | 1.2E-15 | IPR001781 |
| SMART | SM00726 | uim | 129 | 148 | 71.0 | IPR003903 |
| SMART | SM00726 | uim | 160 | 179 | 0.64 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 206 | 266 | 12.6523 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 160 | 179 | 9.456464 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 208 | 242 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 110 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 528 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 113 | 130 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 500 | 532 | - | - |
| Coils | Coil | Coil | 152 | 172 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_011085541.1 | protein DA1-related 1-like [Sesamum indicum] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A6I9TJT6 | protein DA1-related 1-like OS=Sesamum indicum OX=4182 GN=LOC105167484 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology