Basic Information
Locus ID:
jg30616
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 1592872 | 1593492 | + | jg30616 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.89 | 22,338.85 Da | 61.86 | 74.71 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 18 | 62 | 1.1279E-28 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 18 | 65 | 5.5E-10 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 16 | 73 | 6.24E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 74 | 8.1E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 20 | 60 | 9.6E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 20 | 61 | 13.197422 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 35 | 44 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 78 | 105 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011085546.1 | E3 ubiquitin-protein ligase RNF5 [Sesamum indicum] | 0 |
| Q99942 | E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TJT7 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105167488 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology