Basic Information
Locus ID:
jg30498
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the WD repeat SEC13 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 716023 | 719822 | + | jg30498 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.46 | 25,621.64 Da | 35.71 | 86.72 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 50 | 193 | 1.9E-11 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 95 | 192 | 7.5E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 42 | 94 | 3.7E-8 | IPR015943 |
| SMART | SM00320 | WD40_4 | 101 | 152 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 50 | 91 | 0.0084 | IPR001680 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01340.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_039126091.1 | protein transport protein SEC13 homolog B-like [Dioscorea cayenensis subsp. rotundata] | 0 |
| Q9SRI1 | Protein transport protein SEC13 homolog A OS=Arabidopsis thaliana OX=3702 GN=SEC13A PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9HAG3 | Vesicle coat complex COPII, subunit SEC13 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_12856 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg30498 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011023 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27914 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10431 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-7800, nbisL1-mrna-7899 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-23179 |