Basic Information
Locus ID:
jg30472
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr25 | 507355 | 521302 | - | jg30472 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 147,584.63 Da | 52.82 | 68.69 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 343 | 372 | 0.00135052 | IPR001202 |
| CDD | cd00487 | Pep_deformylase | 88 | 228 | 1.8671E-62 | IPR023635 |
| CDD | cd18787 | SF2_C_DEAD | 703 | 832 | 3.74944E-63 | - |
| Pfam | PF01327 | Polypeptide deformylase | 86 | 235 | 1.7E-48 | IPR023635 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 508 | 677 | 7.2E-49 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 714 | 823 | 1.1E-33 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 556 | 838 | 4.27E-74 | IPR027417 |
| SUPERFAMILY | SSF51045 | WW domain | 333 | 374 | 1.08E-7 | IPR036020 |
| SUPERFAMILY | SSF56420 | Peptide deformylase | 86 | 249 | 3.79E-53 | IPR036821 |
| Gene3D | G3DSA:3.90.45.10 | Peptide deformylase | 71 | 262 | 2.6E-66 | IPR036821 |
| Gene3D | G3DSA:3.40.50.300 | - | 459 | 693 | 6.7E-87 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 694 | 865 | 3.0E-58 | IPR027417 |
| SMART | SM00490 | helicmild6 | 743 | 823 | 1.8E-34 | IPR001650 |
| SMART | SM00487 | ultradead3 | 503 | 706 | 4.8E-64 | IPR014001 |
| SMART | SM00456 | ww_5 | 341 | 374 | 3.2E-5 | IPR001202 |
| TIGRFAM | TIGR00079 | pept_deformyl: peptide deformylase | 86 | 244 | 5.5E-45 | IPR023635 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 515 | 689 | 30.232656 | IPR014001 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 340 | 374 | 10.817101 | IPR001202 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 484 | 512 | 10.233167 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 718 | 862 | 24.650425 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 635 | 643 | - | IPR000629 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 346 | 372 | - | IPR001202 |
| PRINTS | PR01576 | Peptide deformylase signature | 115 | 144 | 1.5E-32 | IPR023635 |
| PRINTS | PR01576 | Peptide deformylase signature | 205 | 234 | 1.5E-32 | IPR023635 |
| PRINTS | PR01576 | Peptide deformylase signature | 186 | 204 | 1.5E-32 | IPR023635 |
| PRINTS | PR01576 | Peptide deformylase signature | 174 | 185 | 1.5E-32 | IPR023635 |
| Hamap | MF_00163 | Peptide deformylase [def]. | 84 | 247 | 28.130783 | IPR023635 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 385 | 418 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1160 | 1185 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 964 | 979 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1054 | 1081 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 946 | 988 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1000 | 1022 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 946 | 963 | - | - |
| Coils | Coil | Coil | 237 | 257 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G01540.1 | DEAD box RNA helicase 1. RNA HELICASE DRH1 | 0 |
| RefSeq | XP_011097425.1 | ATP-dependent RNA helicase-like protein DB10 [Sesamum indicum] | 0 |
| P46942 | ATP-dependent RNA helicase-like protein DB10 OS=Nicotiana sylvestris OX=4096 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9U8Y7 | ATP-dependent RNA helicase-like protein DB10 OS=Sesamum indicum OX=4182 GN=LOC105176351 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology