halophFGD

Basic Information

Locus ID: jg30401

Species & Taxonomic ID: Avicennia marina & 1381980

Genome Assembly: GCA_013168755.1

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
ScioBoG_4651_HRSCAF_4670	1	777	-	jg30401

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.93	25,014.71 Da	43.71	80.13	-0.28

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF01546	Peptidase family M20/M25/M40	135	230	6.4E-16	IPR002933
SUPERFAMILY	SSF53187	Zn-dependent exopeptidases	57	233	8.57E-43	-
Gene3D	G3DSA:3.40.630.10	Zn peptidases	52	234	6.1E-49	-

Gene Ontology

Molecular Function:

GO:0016787 (hydrolase activity)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_005645362.1	peptidase M20 [Coccomyxa subellipsoidea C-169]	0
TrEMBL	Q0G4X6	M20_dimer domain-containing protein OS=Fulvimarina pelagi HTCC2506 OX=314231 GN=FP2506_10601 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg30401
Dunaliellaceae	Dunaliella salina	2	Dusal.0015s00030.v1.0, Dusal.1785s00001.v1.0