Basic Information
Locus ID:
jg30367
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr32 | 10310046 | 10324979 | + | jg30367 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 226,411.70 Da | 48.09 | 86.98 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04133 | Rop_like | 1897 | 2069 | 4.11679E-123 | - |
| CDD | cd00078 | HECTc | 1423 | 1826 | 2.276E-117 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1523 | 1826 | 7.8E-77 | IPR000569 |
| Pfam | PF00071 | Ras family | 1899 | 2069 | 1.1E-50 | IPR001806 |
| SUPERFAMILY | SSF48371 | ARM repeat | 84 | 635 | 8.06E-42 | IPR016024 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1898 | 2069 | 1.36E-52 | IPR027417 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 1415 | 1824 | 7.46E-94 | IPR035983 |
| Gene3D | G3DSA:3.40.50.300 | - | 1897 | 2082 | 5.2E-72 | IPR027417 |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 1363 | 1597 | 7.0E-42 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 167 | 487 | 1.9E-51 | IPR011989 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1705 | 1828 | 6.8E-32 | - |
| SMART | SM00175 | rab_sub_5 | 1898 | 2071 | 2.9E-30 | - |
| SMART | SM00119 | hect_3 | 1437 | 1827 | 6.1E-76 | IPR000569 |
| SMART | SM00174 | rho_sub_3 | 1900 | 2071 | 5.4E-117 | IPR001806 |
| SMART | SM00173 | ras_sub_4 | 1899 | 2071 | 1.4E-23 | - |
| TIGRFAM | TIGR00231 | small_GTP: small GTP-binding protein domain | 1898 | 2063 | 1.7E-33 | IPR005225 |
| ProSiteProfiles | PS51420 | small GTPase Rho family profile. | 1891 | 2068 | 25.310081 | - |
| ProSiteProfiles | PS51419 | small GTPase Rab1 family profile. | 1892 | 2089 | 21.029928 | - |
| ProSiteProfiles | PS51421 | small GTPase Ras family profile. | 1891 | 2089 | 17.875692 | IPR001806 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1447 | 1835 | 53.777729 | IPR000569 |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 2000 | 2013 | 2.5E-34 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 1938 | 1960 | 2.5E-34 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 1898 | 1919 | 2.5E-34 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 1921 | 1937 | 2.5E-34 | - |
| PRINTS | PR00449 | Transforming protein P21 ras signature | 2046 | 2068 | 2.5E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 699 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1048 | 1066 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 958 | 1010 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1772 | 1791 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 91 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 650 | 668 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 958 | 1097 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1400 | 1420 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1067 | 1097 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 516 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 510 | 530 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 680 | 699 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 107 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 107 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_011088600.1 | E3 ubiquitin-protein ligase UPL3 [Sesamum indicum] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9TQM9 | HECT-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105169786 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology