Basic Information
Locus ID:
jg30318
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Beta-galactosidase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr32 | 9984510 | 9993678 | + | jg30318 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 109,004.95 Da | 37.91 | 73.14 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01301 | Glycosyl hydrolases family 35 | 34 | 338 | 1.3E-119 | IPR031330 |
| Pfam | PF17834 | Beta-sandwich domain in beta galactosidase | 346 | 417 | 9.9E-28 | IPR041392 |
| Pfam | PF01426 | BAH domain | 771 | 885 | 5.3E-18 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 890 | 938 | 1.1E-7 | IPR019787 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 582 | 722 | 4.04E-24 | IPR008979 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 401 | 572 | 3.97E-26 | IPR008979 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 880 | 943 | 1.07E-17 | IPR011011 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 25 | 342 | 1.95E-107 | IPR017853 |
| Gene3D | G3DSA:2.60.120.260 | - | 414 | 569 | 1.6E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 884 | 953 | 2.7E-17 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 746 | 883 | 6.6E-28 | IPR043151 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 24 | 343 | 1.3E-118 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 593 | 728 | 6.3E-14 | - |
| SMART | SM00249 | PHD_3 | 890 | 937 | 3.0E-5 | IPR001965 |
| SMART | SM00439 | BAH_4 | 770 | 886 | 3.1E-36 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 888 | 939 | 8.7246 | IPR019787 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 770 | 886 | 21.07435 | IPR001025 |
| ProSitePatterns | PS01182 | Glycosyl hydrolases family 35 putative active site. | 172 | 184 | - | IPR019801 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 306 | 322 | 5.9E-83 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 249 | 264 | 5.9E-83 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 113 | 132 | 5.9E-83 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 37 | 54 | 5.9E-83 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 170 | 185 | 5.9E-83 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 286 | 301 | 5.9E-83 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 618 | 632 | 5.9E-83 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 645 | 661 | 5.9E-83 | IPR001944 |
| PRINTS | PR00742 | Glycosyl hydrolase family 35 signature | 58 | 76 | 5.9E-83 | IPR001944 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36360.1 | beta-galactosidase 3. putative beta-galactosidase (BGAL3 gene) | 0 |
| RefSeq | XP_011092826.1 | beta-galactosidase 3 [Sesamum indicum] | 0 |
| Q9SCV9 | Beta-galactosidase 3 OS=Arabidopsis thaliana OX=3702 GN=BGAL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9TZ89 | Beta-galactosidase OS=Sesamum indicum OX=4182 GN=LOC105172910 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology