Basic Information
Locus ID:
jg30000
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr32 | 7200112 | 7202210 | - | jg30000 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.25 | 49,749.04 Da | 47.75 | 80.02 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 85 | 405 | 4.9E-85 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 49 | 440 | 2.29E-124 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 42 | 435 | 2.5E-116 | IPR012334 |
| SMART | SM00710 | pbh1 | 269 | 289 | 4100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 246 | 267 | 130.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 219 | 245 | 600.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 299 | 320 | 1.7 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 276 | 289 | - | IPR000743 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Module:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G02460.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_020552860.1 | polygalacturonase At1g48100 [Sesamum indicum] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9FX14 | Polygalacturonase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_30058 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology