Basic Information
Locus ID:
jg29961
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr32 | 6412387 | 6424341 | + | jg29961 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 121,163.71 Da | 43.48 | 83.14 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 449 | 483 | 0.0055 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 883 | 916 | 2.0E-4 | IPR001680 |
| SUPERFAMILY | SSF101908 | Putative isomerase YbhE | 337 | 530 | 1.1E-23 | - |
| SUPERFAMILY | SSF50998 | Quinoprotein alcohol dehydrogenase-like | 465 | 1016 | 7.85E-40 | IPR011047 |
| Gene3D | G3DSA:2.130.10.10 | - | 705 | 933 | 7.5E-26 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 444 | 632 | 3.9E-21 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 326 | 443 | 6.0E-8 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 934 | 1073 | 6.6E-7 | IPR015943 |
| SMART | SM00667 | Lish | 4 | 36 | 1.6E-4 | IPR006594 |
| SMART | SM00320 | WD40_4 | 529 | 572 | 210.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 392 | 436 | 67.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 485 | 526 | 0.16 | IPR001680 |
| SMART | SM00320 | WD40_4 | 336 | 375 | 0.013 | IPR001680 |
| SMART | SM00320 | WD40_4 | 834 | 874 | 2.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 877 | 916 | 8.7E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1022 | 1063 | 130.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 6.3E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 966 | 1008 | 4.3 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 8.1E-14 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 449 | 492 | 9.338814 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 884 | 919 | 10.205597 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 884 | 925 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.021325 | IPR006594 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.453461 | IPR006595 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 470 | 484 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1083 | 1102 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1065 | 1102 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27030.1 | TOPLESS-related 3. | 0 |
| RefSeq | XP_011092107.1 | topless-related protein 3 [Sesamum indicum] | 0 |
| Q84JM4 | Topless-related protein 3 OS=Arabidopsis thaliana OX=3702 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UD74 | topless-related protein 3 OS=Sesamum indicum OX=4182 GN=LOC105172405 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology