Basic Information
Locus ID:
jg29931
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
WD repeat domain phosphoinositide-interacting protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr32 | 5274000 | 5279686 | - | jg29931 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.56 | 39,562.76 Da | 50.65 | 90.65 | -0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 21 | 237 | 7.14E-17 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 19 | 294 | 6.5E-12 | IPR015943 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 319 | 370 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 339 | 358 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.3 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_034707541.1 | autophagy-related protein 18a-like [Vitis riparia] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A438HF87 | Autophagy-related protein 18a OS=Vitis vinifera OX=29760 GN=ATG18A_6 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||