Basic Information
Locus ID:
jg29567
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr32 | 129595 | 130830 | - | jg29567 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 46,351.19 Da | 53.29 | 110.75 | 0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 15 | 58 | 1.3386E-20 | - |
| Pfam | PF04564 | U-box domain | 11 | 82 | 9.9E-19 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 3 | 83 | 1.61E-26 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 97 | 394 | 2.97E-11 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 91 | 2.2E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 92 | 397 | 8.6E-10 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 14 | 78 | 3.0E-22 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 10 | 85 | 31.059019 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_021678894.1 | E3 ubiquitin-protein ligase PUB22-like [Hevea brasiliensis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A1U7ZLH6 | RING-type E3 ubiquitin transferase OS=Nelumbo nucifera OX=4432 GN=LOC104595170 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology