Basic Information
Locus ID:
jg29483
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 12957978 | 12965459 | - | jg29483 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.64 | 112,379.94 Da | 45.45 | 115.76 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 265 | 306 | 3.38014E-15 | - |
| Pfam | PF04826 | Armadillo-like | 453 | 608 | 7.0E-6 | IPR006911 |
| Pfam | PF04564 | U-box domain | 265 | 332 | 1.3E-18 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 885 | 913 | 4.4E-5 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 340 | 619 | 1.64E-34 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 880 | 1004 | 1.79E-14 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 259 | 334 | 2.32E-25 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 521 | 918 | 9.6E-32 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 868 | 1008 | 8.7E-15 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 11 | 127 | 2.3E-10 | IPR036537 |
| Gene3D | G3DSA:1.25.10.10 | - | 629 | 867 | 1.3E-20 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 249 | 336 | 7.0E-27 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 337 | 628 | 4.4E-33 | IPR011989 |
| SMART | SM00185 | arm_5 | 709 | 754 | 220.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 922 | 962 | 17.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 576 | 618 | 140.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 367 | 407 | 82.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 804 | 844 | 8.7 | IPR000225 |
| SMART | SM00504 | Ubox_2 | 264 | 328 | 6.1E-25 | IPR003613 |
| SMART | SM00185 | arm_5 | 412 | 449 | 300.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 535 | 575 | 5.4E-4 | IPR000225 |
| SMART | SM00185 | arm_5 | 878 | 918 | 0.54 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 546 | 588 | 9.9224 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 260 | 335 | 31.359772 | IPR003613 |
| Coils | Coil | Coil | 195 | 222 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G76390.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_051147172.1 | U-box domain-containing protein 43-like [Andrographis paniculata] | 0 |
| Q10FT0 | U-box domain-containing protein 24 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9GL08 | RING-type E3 ubiquitin transferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21454 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg10276, jg29483 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30006200, pistato.v30165330 |
| Apiaceae | Apium graveolens | 1 | Ag11G03591 |
| Arecaceae | Cocos nucifera | 1 | scaffold021460G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103719070 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_08.421.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri18G26855, Ftri5G33561 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1296 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1451 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2849 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_9_RagTag.629 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-9626 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-7428 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.191 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017527 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-1687 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-5412 |
| Salicaceae | Populus euphratica | 6 | populus_peu27526, populus_peu27527, populus_peu27984 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132632125, gene-LOC132644366, gene-LOC132645405 |
| Solanaceae | Solanum chilense | 2 | SOLCI000591400, SOLCI005051300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008446 |