Basic Information
Locus ID:
jg29465
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
CAS/CSE protein, C-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 12837714 | 12842130 | + | jg29465 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.27 | 106,135.46 Da | 44.55 | 101.83 | 0.09 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08506 | Cse1 | 163 | 533 | 1.4E-129 | IPR013713 |
| Pfam | PF03810 | Importin-beta N-terminal domain | 29 | 104 | 7.5E-12 | IPR001494 |
| Pfam | PF03378 | CAS/CSE protein, C-terminus | 534 | 787 | 5.4E-100 | IPR005043 |
| SUPERFAMILY | SSF48371 | ARM repeat | 1 | 852 | 1.59E-120 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 7 | 868 | 2.0E-241 | IPR011989 |
| SMART | SM00913 | IBN_N_2 | 29 | 105 | 9.0E-12 | IPR001494 |
| ProSiteProfiles | PS50166 | Importin-beta N-terminal domain profile. | 29 | 105 | 18.396111 | IPR001494 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46520.1 | cellular apoptosis susceptibility protein, putative / importin-alpha re-exporter, putative. | 0 |
| RefSeq | XP_011093951.1 | exportin-2 [Sesamum indicum] | 0 |
| Q9ZPY7 | Exportin-2 OS=Arabidopsis thaliana OX=3702 GN=CAS PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9H4D5 | Nuclear export receptor CSE1/CAS (Importin beta superfamily) OS=Handroanthus impetiginosus OX=429701 GN=CDL12_15014 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29465 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1365 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah031719 |
| Amaranthaceae | Beta vulgaris | 3 | BVRB_6g153240, BVRB_8g195450, BVRB_8g195460 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg239, Sbi_jg36307 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg4353 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00002091 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl35673, Sgl41062 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000015528, gene:ENSEOMG00000022471 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.2AG0000570, CQ.Regalona.r1.4AG0023860 ... |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30005930 |
| Apiaceae | Apium graveolens | 2 | Ag4G01397, Ag6G00233 |
| Arecaceae | Cocos nucifera | 2 | COCNU_02G004130, COCNU_03G011340 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702507 |
| Asparagaceae | Asparagus officinalis | 2 | AsparagusV1_02.2018.V1.1, AsparagusV1_03.1715.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G06712 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G46520.1 |
| Brassicaceae | Eutrema salsugineum | 2 | Thhalv10001293m.g.v1.0, Thhalv10019782m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g28560.v2.2 |
| Brassicaceae | Brassica nigra | 5 | BniB03g002450.2N, BniB03g002460.2N, BniB05g026550.2N ... |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1318 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1473 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno02g18940 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0244s00004.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate01g34510, gene.Thate05g02110 |
| Nitrariaceae | Nitraria sibirica | 2 | evm.TU.LG04.691, evm.TU.LG11.183 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00010931, Pov_00041607 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb1G02574, Lb3G18008 |
| Poaceae | Echinochloa crus-galli | 4 | AH01.833, BH01.977, CH01.1020, CH03.2858 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0144070, gene-QOZ80_2BG0199470 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0249790.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_051633 |
| Poaceae | Oryza coarctata | 3 | Oco01G006130, Oco02G006180, Oco06G011880 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g13430.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_01G105400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0204823 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr03G000590, Chr03G000600, Chr08G005020, Chr14G017530 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G283700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG021560, gene_TRIDC3BG026290 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G158500.2.cds1, TraesCS3B02G185300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb055080_P001, Zm00001eb216140_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-24253, nbis-gene-32736 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7172 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG04.2397 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc02g00630 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.628 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-10719 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14789 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11287 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.264 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014150 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-10229 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7270 |
| Salicaceae | Populus euphratica | 2 | populus_peu27548, populus_peu31542 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633319 |
| Solanaceae | Solanum chilense | 1 | SOLCI005305100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107007433 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.30645_chr10_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0417 |
| Zosteraceae | Zostera marina | 1 | Zosma01g16050.v3.1 |