Basic Information
Locus ID:
jg29459
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 12795977 | 12798067 | - | jg29459 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.40 | 31,518.90 Da | 47.58 | 69.31 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 13 | 51 | 2.14086E-13 | - |
| CDD | cd03829 | Sina | 129 | 257 | 1.86509E-63 | - |
| Pfam | PF03145 | Seven in absentia protein family | 57 | 256 | 2.2E-77 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 68 | 257 | 6.47E-49 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 7 | 55 | 4.71E-6 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 122 | 256 | 2.1E-37 | IPR008974 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 63 | 121 | 1.7E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 60 | 1.1E-5 | IPR013083 |
| ProSiteProfiles | PS51081 | Zinc finger SIAH-type profile. | 68 | 128 | 14.031925 | IPR013010 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 15 | 51 | 9.214112 | IPR001841 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_011093868.1 | E3 ubiquitin-protein ligase SINAT5 [Sesamum indicum] | 0 |
| Q84JL3 | E3 ubiquitin-protein ligase SINAT3 OS=Arabidopsis thaliana OX=3702 GN=SINAT3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9U846 | RING-type E3 ubiquitin transferase OS=Sesamum indicum OX=4182 GN=LOC105173705 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology