Basic Information
Locus ID:
jg29377
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Protein RIC1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 12261093 | 12272839 | + | jg29377 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 122,430.53 Da | 48.84 | 94.94 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07064 | RIC1 | 635 | 883 | 9.0E-70 | IPR009771 |
| SUPERFAMILY | SSF82171 | DPP6 N-terminal domain-like | 72 | 615 | 5.49E-21 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 72 | 409 | 4.7E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 203 | 240 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 397 | 435 | 27.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 244 | 291 | 7.2 | IPR001680 |
| Coils | Coil | Coil | 1054 | 1074 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G28350.1 | Quinoprotein amine dehydrogenase, beta chain-like; RIC1-like guanyl-nucleotide exchange factor. | 0 |
| RefSeq | XP_011092768.1 | RAB6A-GEF complex partner protein 1 [Sesamum indicum] | 0 |
| Q69ZJ7 | Guanine nucleotide exchange factor subunit RIC1 OS=Mus musculus OX=10090 GN=Ric1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6I9U1Q9 | RAB6A-GEF complex partner protein 1 OS=Sesamum indicum OX=4182 GN=LOC105172867 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg29377 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_1686 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022967 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004240 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4549, Sbi_jg49444 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5955 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000479 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11039, Sgl16448 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014331, gene:ENSEOMG00000033206 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0003190, CQ.Regalona.r1.2BG0025190 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30004790, pistato.v30004810 |
| Apiaceae | Apium graveolens | 2 | Ag6G00192, Ag6G01580 |
| Arecaceae | Cocos nucifera | 1 | COCNU_10G000160 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103703979 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.2428.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G08641 |
| Brassicaceae | Arabidopsis thaliana | 3 | AT3G61480.1, AT5G28350.1, AT5G28442.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005756m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp5g01920.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB06g053170.2N, BniB08g075600.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0964 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0995 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g09390 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0874s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate02g20190 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2813 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.836 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00001464 |
| Plumbaginaceae | Limonium bicolor | 4 | Lb0G38296, Lb1G03554, Lb7G32894, Lb7G32896 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3717, BH07.3539, CH07.3611 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0148340, gene-QOZ80_2BG0203710 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0622040.2 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_025884, gene-QYE76_026150 |
| Poaceae | Oryza coarctata | 2 | Oco03G023700, Oco04G024260 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g54500.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G299800 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0202982 |
| Poaceae | Sporobolus alterniflorus | 6 | Chr09G018150, Chr0G032560, Chr13G002350, Chr13G002370 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G614700 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG051920, gene_TRIDC6BG060530 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G344300.1, TraesCS6B02G377200.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb192800_P001, Zm00001eb257250_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-39975 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17298 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2244, evm.TU.LG06.59 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g20790 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_5_RagTag.238, evm.TU.Scaffold_9_RagTag.527 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-21646 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10394 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-10549, nbisL1-mrna-10550, nbisL1-mrna-7341 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000003l.252 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00017765 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-1751, nbisL1-mrna-9178 |
| Rhizophoraceae | Rhizophora mangle | 3 | nbisL1-mrna-19621, nbisL1-mrna-24483, nbisL1-mrna-7056 |
| Salicaceae | Populus euphratica | 2 | populus_peu27663, populus_peu31640 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645553 |
| Solanaceae | Solanum chilense | 1 | SOLCI001074000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002493 |
| Tamaricaceae | Reaumuria soongarica | 2 | MSTRG.19952_chr11_-, gene_1413 |
| Tamaricaceae | Tamarix chinensis | 1 | TC03G2222 |
| Zosteraceae | Zostera marina | 1 | Zosma04g06160.v3.1 |