Basic Information
Locus ID:
jg29359
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 12116598 | 12123667 | + | jg29359 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 98,900.48 Da | 51.72 | 81.93 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01989 | STK_N | 49 | 155 | 1.419E-25 | - |
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 804 | 845 | 1.28879E-20 | - |
| Pfam | PF00069 | Protein kinase domain | 491 | 769 | 7.6E-35 | IPR000719 |
| Pfam | PF04564 | U-box domain | 800 | 872 | 2.6E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 790 | 873 | 9.71E-25 | - |
| SUPERFAMILY | SSF52402 | Adenine nucleotide alpha hydrolases-like | 52 | 120 | 3.18E-5 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 467 | 771 | 1.62E-62 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 474 | 561 | 1.3E-26 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 562 | 784 | 2.8E-41 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 799 | 873 | 8.6E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 803 | 866 | 2.0E-26 | IPR003613 |
| SMART | SM00220 | serkin_6 | 489 | 782 | 1.5E-24 | IPR000719 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 799 | 873 | 33.7658 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 489 | 782 | 30.407194 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 495 | 516 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 607 | 619 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 672 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 651 | 665 | - | - |
| Coils | Coil | Coil | 272 | 307 | - | - |
| Coils | Coil | Coil | 405 | 467 | - | - |
| Coils | Coil | Coil | 318 | 353 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 0 |
| RefSeq | XP_011092453.1 | U-box domain-containing protein 33 [Sesamum indicum] | 0 |
| Q8GUH1 | U-box domain-containing protein 33 OS=Arabidopsis thaliana OX=3702 GN=PUB33 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6I9TYH4 | U-box domain-containing protein 33 OS=Sesamum indicum OX=4182 GN=LOC105172628 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology