Basic Information
Locus ID:
jg29301
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc finger CCCH domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 11701092 | 11706754 | - | jg29301 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.90 | 65,410.64 Da | 38.22 | 75.01 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 471 | 506 | 0.012 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 436 | 466 | 0.011 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 310 | 345 | 1.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 307 | 597 | 2.01E-44 | IPR036322 |
| SUPERFAMILY | SSF50969 | YVTN repeat-like/Quinoprotein amine dehydrogenase | 142 | 362 | 3.45E-6 | IPR011044 |
| Gene3D | G3DSA:2.130.10.10 | - | 375 | 597 | 4.8E-37 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 297 | 370 | 4.3E-7 | IPR015943 |
| SMART | SM00320 | WD40_4 | 306 | 345 | 8.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 429 | 466 | 7.5E-4 | IPR001680 |
| SMART | SM00356 | c3hfinal6 | 58 | 81 | 0.048 | IPR000571 |
| SMART | SM00356 | c3hfinal6 | 277 | 301 | 1.8 | IPR000571 |
| SMART | SM00320 | WD40_4 | 512 | 553 | 16.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 556 | 593 | 110.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 469 | 506 | 2.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 385 | 422 | 0.96 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 313 | 354 | 11.945434 | IPR001680 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 56 | 82 | 10.934172 | IPR000571 |
| ProSiteProfiles | PS50103 | Zinc finger C3H1-type profile. | 275 | 302 | 10.295712 | IPR000571 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 313 | 345 | 9.731054 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 476 | 515 | 9.071468 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 436 | 469 | 9.045603 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 436 | 475 | 11.544415 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 453 | 467 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 332 | 346 | 8.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 493 | 507 | 8.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 453 | 467 | 8.8E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 113 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 234 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 83 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 212 | 226 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G51980.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_011091366.1 | zinc finger CCCH domain-containing protein 48 [Sesamum indicum] | 0 |
| Q9FNZ2 | Zinc finger CCCH domain-containing protein 48 OS=Arabidopsis thaliana OX=3702 GN=ZFWD1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9GL46 | U3 snoRNP-associated protein (Contains WD40 repeats) OS=Handroanthus impetiginosus OX=429701 GN=CDL12_21524 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology