Basic Information
Locus ID:
jg29269
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Fasciclin-like arabinogalactan protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 11520317 | 11521909 | - | jg29269 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 52,970.96 Da | 77.43 | 85.19 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02469 | Fasciclin domain | 197 | 327 | 6.1E-17 | IPR000782 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 184 | 328 | 1.07E-21 | IPR036378 |
| SUPERFAMILY | SSF82153 | FAS1 domain | 30 | 133 | 9.68E-15 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 23 | 157 | 5.1E-6 | IPR036378 |
| Gene3D | G3DSA:2.30.180.10 | FAS1 domain | 167 | 327 | 8.7E-15 | IPR036378 |
| SMART | SM00554 | fasc_3 | 223 | 328 | 7.5E-16 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 24 | 171 | 8.936207 | IPR000782 |
| ProSiteProfiles | PS50213 | FAS1/BIgH3 domain profile. | 185 | 325 | 16.579721 | IPR000782 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 336 | 503 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 340 | 354 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 363 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 483 | 503 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G60900.1 | FASCICLIN-like arabinogalactan-protein 10. | 0 |
| RefSeq | XP_011090995.1 | fasciclin-like arabinogalactan protein 8 [Sesamum indicum] | 0 |
| Q9LZX4 | Fasciclin-like arabinogalactan protein 10 OS=Arabidopsis thaliana OX=3702 GN=FLA10 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9I1Y6 | Fasciclin-like arabinogalactan protein 8 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_03474 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology