Basic Information
Locus ID:
jg28982
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
E3 ubiquitin-protein ligase that mediates ubiquitination and subsequent proteasomal degradation of target proteins. E3 ubiquitin ligases accept ubiquitin from an E2 ubiquitin- conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 7572601 | 7574568 | - | jg28982 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.66 | 30,945.85 Da | 39.97 | 70.04 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16571 | RING-HC_SIAHs | 55 | 93 | 1.25714E-15 | - |
| CDD | cd03829 | Sina | 140 | 268 | 8.08658E-65 | - |
| Pfam | PF03145 | Seven in absentia protein family | 104 | 267 | 1.2E-63 | IPR018121 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 105 | 271 | 5.1E-37 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 51 | 98 | 5.98E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 110 | 5.3E-8 | IPR013083 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 137 | 267 | 2.0E-39 | IPR008974 |
| Gene3D | G3DSA:3.30.160.60 | Classic Zinc Finger | 111 | 136 | 5.6E-8 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 57 | 93 | 9.346889 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61790.1 | Protein with RING/U-box and TRAF-like domains. | 0 |
| RefSeq | XP_052176689.1 | E3 ubiquitin-protein ligase DIS1 [Diospyros lotus] | 0 |
| Q10L91 | E3 ubiquitin-protein ligase DIS1 OS=Oryza sativa subsp. japonica OX=39947 GN=DIS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A830DDB0 | RING-type E3 ubiquitin transferase OS=Phtheirospermum japonicum OX=374723 GN=PHJA_002637700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology