Basic Information
Locus ID:
jg28878
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
FBD
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 5146857 | 5150766 | - | jg28878 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.05 | 34,923.21 Da | 46.19 | 96.55 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 88 | 122 | 2.2E-7 | IPR001810 |
| Pfam | PF08387 | FBD | 225 | 258 | 6.2E-6 | IPR006566 |
| SUPERFAMILY | SSF81383 | F-box domain | 86 | 131 | 1.27E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 83 | 262 | 7.2E-8 | IPR032675 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 86 | 134 | 10.027357 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G58900.3 | F-box/RNI-like superfamily protein. | 0 |
| RefSeq | XP_012854787.1 | PREDICTED: FBD-associated F-box protein At5g60610-like [Erythranthe guttata] | 0 |
| Q93ZX6 | F-box/LRR-repeat protein At3g58900 OS=Arabidopsis thaliana OX=3702 GN=At3g58900 PE=2 SV=1 | 0 | |
| TrEMBL | A0A7J0ESA1 | FBD domain-containing protein OS=Actinidia rufa OX=165716 GN=Acr_06g0003670 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 6 | jg22882, jg26218, jg28878, jg28880, jg28881, jg29020 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000027l.110 |
| Solanaceae | Lycium barbarum | 2 | gene-LOC132623410, gene-LOC132640003 |