Basic Information
Locus ID:
jg28873
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Histone-binding protein RBBP4 or subunit C of CAF1 complex
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 5093422 | 5096217 | - | jg28873 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.51 | 44,265.71 Da | 32.55 | 83.60 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 200 | 235 | 0.086 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 284 | 322 | 5.7E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 343 | 378 | 4.7E-4 | IPR001680 |
| Pfam | PF12265 | Histone-binding protein RBBP4 or subunit C of CAF1 complex | 7 | 77 | 3.3E-23 | IPR022052 |
| Pfam | PF00400 | WD domain, G-beta repeat | 241 | 278 | 0.051 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 97 | 380 | 7.51E-47 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 1 | 394 | 5.6E-125 | IPR015943 |
| SMART | SM00320 | WD40_4 | 339 | 379 | 0.0016 | IPR001680 |
| SMART | SM00320 | WD40_4 | 146 | 186 | 6.3E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 238 | 278 | 5.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 282 | 322 | 2.7E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 195 | 235 | 0.0018 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 153 | 188 | 9.706414 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 289 | 324 | 12.74747 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 289 | 324 | 10.601049 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 346 | 380 | 9.238559 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 202 | 244 | 10.274523 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 173 | 187 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 309 | 323 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 265 | 279 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 173 | 187 | 1.6E-5 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 309 | 323 | 1.6E-5 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G16780.1 | Transducin family protein / WD-40 repeat family protein. Encodes a WD-40 repeat protein similar to yeast MSI1. | 0 |
| RefSeq | XP_012837187.1 | PREDICTED: WD-40 repeat-containing protein MSI2-like [Erythranthe guttata] | 0 |
| O22468 | WD-40 repeat-containing protein MSI2 OS=Arabidopsis thaliana OX=3702 GN=MSI2 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2G9HNQ9 | Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 OS=Handroanthus impetiginosus OX=429701 GN=CDL12_08153 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology