Basic Information
Locus ID:
jg28812
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Ubiquitin fusion degradation protein 1 homolog
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 4570849 | 4574734 | - | jg28812 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.92 | 35,589.78 Da | 46.93 | 65.59 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03152 | Ubiquitin fusion degradation protein UFD1 | 13 | 184 | 6.1E-79 | IPR004854 |
| Gene3D | G3DSA:2.40.40.50 | - | 7 | 108 | 1.4E-43 | IPR042299 |
| Gene3D | G3DSA:3.10.330.10 | - | 109 | 182 | 2.0E-34 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 190 | 219 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 320 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 286 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G21270.1 | ubiquitin fusion degradation 1. | 0 |
| RefSeq | XP_011088496.1 | ubiquitin fusion degradation protein 1 homolog isoform X1 [Sesamum indicum] | 0 |
| Q55BK0 | Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum OX=44689 GN=ufd1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6I9TRY2 | ubiquitin fusion degradation protein 1 homolog isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105169706 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology