Basic Information
Locus ID:
jg28788
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 4345036 | 4348489 | + | jg28788 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 24,894.76 Da | 59.07 | 50.51 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01426 | BAH domain | 22 | 136 | 1.3E-22 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 141 | 189 | 2.1E-9 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 131 | 194 | 1.04E-17 | IPR011011 |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 135 | 2.2E-31 | IPR043151 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 136 | 202 | 2.9E-19 | IPR013083 |
| SMART | SM00249 | PHD_3 | 141 | 188 | 4.7E-8 | IPR001965 |
| SMART | SM00439 | BAH_4 | 21 | 137 | 7.2E-42 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 137 | 23.86694 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 139 | 190 | 9.125099 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 142 | 187 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 195 | 216 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_020552092.1 | chromatin remodeling protein SHL isoform X2 [Sesamum indicum] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A8M8V0B3 | chromatin remodeling protein SHL isoform X2 OS=Sesamum indicum OX=4182 GN=LOC105169677 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology