Basic Information
Locus ID:
jg28740
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 3955395 | 3957919 | - | jg28740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.10 | 31,670.25 Da | 49.63 | 74.37 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 17 | 61 | 5.29153E-26 | - |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 18 | 59 | 8.7E-8 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 16 | 72 | 1.02E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 7 | 78 | 7.0E-16 | IPR013083 |
| SMART | SM00184 | ring_2 | 19 | 59 | 1.4E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 19 | 60 | 13.064645 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 34 | 43 | - | IPR017907 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011088341.1 | E3 ubiquitin-protein ligase RNF5-like [Sesamum indicum] | 0 |
| O35445 | E3 ubiquitin-protein ligase RNF5 OS=Mus musculus OX=10090 GN=Rnf5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2G9GAR0 | RING-type E3 ubiquitin transferase OS=Handroanthus impetiginosus OX=429701 GN=CDL12_25173 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology