Basic Information
Locus ID:
jg28729
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 3901007 | 3902230 | - | jg28729 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.82 | 45,479.99 Da | 94.21 | 65.43 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 154 | 196 | 1.74253E-18 | - |
| Pfam | PF13639 | Ring finger domain | 153 | 196 | 8.9E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 153 | 202 | 1.97E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 134 | 204 | 1.2E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 154 | 195 | 4.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 154 | 196 | 12.179465 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 238 | 261 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 350 | 371 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 36 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 388 | 407 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18930.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_011088757.2 | RING-H2 finger protein ATL65, partial [Sesamum indicum] | 0 |
| Q67YI6 | RING-H2 finger protein ATL65 OS=Arabidopsis thaliana OX=3702 GN=ATL65 PE=2 SV=2 | 0 | |
| TrEMBL | A0A830DBZ8 | RING-type E3 ubiquitin transferase OS=Phtheirospermum japonicum OX=374723 GN=PHJA_002527000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg1032, jg28728, jg28729 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_21605 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah010320 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_9g218150 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg12503, Sbi_jg45815 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg20175 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00022398 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl00020, Sgl05088 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000039621, gene:ENSEOMG00000051938 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.7BG0008280, CQ.Regalona.r1.9AG0016190 |
| Apiaceae | Apium graveolens | 1 | Ag1G00908 |
| Arecaceae | Cocos nucifera | 1 | COCNU_14G010040 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103696059, gene-LOC103721172 |
| Asteraceae | Flaveria trinervia | 1 | Ftri15G18753 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G18930.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10020783m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp3g17020.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g045450.2N, BniB07g030230.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq09G0033 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl09G0039 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno11g03500 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g05270 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG08.80 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00035685 |
| Poaceae | Echinochloa crus-galli | 3 | AH05.3933, BH05.4020, CH05.4219 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0396400, gene-QOZ80_5BG0444690 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0436920.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_000624, gene-QYE76_017574 |
| Poaceae | Oryza coarctata | 2 | Oco23G009680, Oco24G009390 |
| Poaceae | Oryza sativa | 1 | LOC_Os12g40460.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G129400 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr04G018340, Chr06G019030, Chr19G008230, Chr27G008410 |
| Poaceae | Thinopyrum elongatum | 1 | Tel5E01G131600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC5AG009710, gene_TRIDC5BG011340 |
| Poaceae | Triticum aestivum | 3 | TraesCS5A02G062400.1.cds1, TraesCS5B02G069700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb030780_P001, Zm00001eb135320_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-30481 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g26065 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG08.1860, evm.TU.LG22.1 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc04g06640 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_1_RagTag.2153, evm.TU.Scaffold_2_RagTag.257 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-4943, nbisL1-mrna-5962 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-16925, nbisL1-mrna-18715 |
| Rhizophoraceae | Ceriops zippeliana | 2 | nbisL1-mrna-3385, nbisL1-mrna-9870 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000009l.299, add.evm.TU.utg000016l.63 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00005561, Maker00016566 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-18608, nbisL1-mrna-22685 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-1297, nbisL1-mrna-14081 |
| Salicaceae | Populus euphratica | 1 | populus_peu36422 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132599127 |
| Solanaceae | Solanum chilense | 1 | SOLCI003003000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107008420 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_7804 |
| Tamaricaceae | Tamarix chinensis | 1 | TC10G0531 |
| Zosteraceae | Zostera marina | 1 | Zosma06g06940.v3.1 |