Basic Information
Locus ID:
jg28682
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 3526467 | 3528311 | - | jg28682 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.61 | 68,997.45 Da | 45.35 | 66.74 | -0.71 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13041 | PPR repeat family | 340 | 384 | 5.6E-8 | IPR002885 |
| Pfam | PF14432 | DYW family of nucleic acid deaminases | 514 | 604 | 5.1E-32 | IPR032867 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 360 | 479 | 5.5E-21 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 240 | 359 | 7.6E-8 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 340 | 373 | 1.1E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 337 | 371 | 11.805378 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 372 | 406 | 8.889672 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G15690.1 | Tetratricopeptide repeat (TPR)-like superfamily protein. | 0 |
| RefSeq | XP_011088270.1 | pentatricopeptide repeat-containing protein At2g15690 [Sesamum indicum] | 0 |
| Q9ZQE5 | Pentatricopeptide repeat-containing protein At2g15690, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-H66 PE=1 SV=2 | 0 | |
| TrEMBL | A0A2G9GYP4 | DYW_deaminase domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_17009 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology