halophFGD

Basic Information

Locus ID: jg28661

Species & Taxonomic ID: Avicennia marina & 1381980

Genome Assembly: GCA_013168755.1

Description: E3 ubiquitin ligase SUD1

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr18	3369230	3371946	-	jg28661

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
4.98	47,146.83 Da	46.41	94.20	0.12

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd16702	RING_CH-C4HC3_MARCH6	60	109	1.61416E-30	-
Pfam	PF12906	RING-variant domain	61	107	5.8E-16	IPR011016
SUPERFAMILY	SSF57850	RING/U-box	55	111	6.28E-17	-
Gene3D	G3DSA:3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	49	119	3.1E-23	IPR013083
SMART	SM00744	ringv_2	60	108	1.4E-24	IPR011016
ProSiteProfiles	PS51292	Zinc finger RING-CH-type profile.	53	114	23.760836	IPR011016
MobiDBLite	mobidb-lite	consensus disorder prediction	13	41	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	41	-	-
Coils	Coil	Coil	278	298	-	-

Gene Ontology

Molecular Function:

GO:0008270 (zinc ion binding)

KEGG Pathway

KO Term:

K10661 (E3 ubiquitin-protein ligase MARCH6 [EC:2.3.2.27])

Pathway:

ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum)

Best hit

Source	Best Hit ID	Description
TAIR	AT4G34100.2	RING/U-box superfamily protein.
RefSeq	XP_011088230.1	probable E3 ubiquitin ligase SUD1 [Sesamum indicum]
Swiss-Prot	F4JKK0	Probable E3 ubiquitin ligase SUD1 OS=Arabidopsis thaliana OX=3702 GN=SUD1 PE=1 SV=1
TrEMBL	A0A6I9U316	probable E3 ubiquitin ligase SUD1 OS=Sesamum indicum OX=4182 GN=LOC105169523 PE=4 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	1	jg28661
Amaranthaceae	Suaeda glauca	1	Sgl60961
Salicaceae	Populus euphratica	1	populus_peu36319