Basic Information
Locus ID:
jg28388
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RQC
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 1288675 | 1302040 | + | jg28388 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.70 | 128,950.60 Da | 45.47 | 78.55 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 594 | 726 | 1.15984E-71 | - |
| CDD | cd17920 | DEXHc_RecQ | 394 | 593 | 4.56619E-102 | - |
| Pfam | PF16124 | RecQ zinc-binding | 728 | 809 | 4.5E-15 | IPR032284 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 405 | 573 | 5.1E-18 | IPR011545 |
| Pfam | PF00570 | HRDC domain | 976 | 1043 | 3.8E-14 | IPR002121 |
| Pfam | PF09382 | RQC domain | 817 | 931 | 1.1E-21 | IPR018982 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 610 | 716 | 6.9E-18 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 378 | 735 | 2.83E-41 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 974 | 1045 | 9.59E-13 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 592 | 860 | 3.07E-59 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 817 | 927 | 5.0E-20 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 967 | 1054 | 8.6E-22 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 365 | 593 | 1.8E-89 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 594 | 813 | 5.0E-66 | IPR027417 |
| SMART | SM00490 | helicmild6 | 636 | 717 | 5.7E-27 | IPR001650 |
| SMART | SM00341 | hrdc7 | 971 | 1053 | 5.7E-5 | IPR002121 |
| SMART | SM00956 | RQC_2 | 819 | 930 | 5.4E-27 | IPR018982 |
| SMART | SM00487 | ultradead3 | 399 | 602 | 1.5E-29 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 395 | 870 | 1.4E-166 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 611 | 772 | 19.31749 | IPR001650 |
| ProSiteProfiles | PS50206 | Rhodanese domain profile. | 626 | 668 | 9.769975 | IPR001763 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 411 | 586 | 22.033888 | IPR014001 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 971 | 1053 | 17.777277 | IPR002121 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 525 | 534 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 935 | 961 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 132 | 160 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1054 | 1094 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 99 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1132 | 1153 | - | - |
| Coils | Coil | Coil | 258 | 278 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G10930.1 | DNA helicase (RECQl4A). DNA helicase involved in the maintenance of genome stability by modulation of the DNA damage response and suppression of homologous recombination. | 0 |
| RefSeq | XP_011087725.1 | ATP-dependent DNA helicase Q-like 4A [Sesamum indicum] | 0 |
| Q8L840 | ATP-dependent DNA helicase Q-like 4A OS=Arabidopsis thaliana OX=3702 GN=RECQL4A PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9TNT6 | DNA helicase OS=Sesamum indicum OX=4182 GN=LOC105169121 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology