Basic Information
Locus ID:
jg2835
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Hippocampus abundant
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr28 | 10609484 | 10618353 | - | jg2835 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 65,066.44 Da | 46.56 | 102.61 | 0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17330 | MFS_SLC46_TetA_like | 10 | 411 | 1.32732E-59 | - |
| Pfam | PF07690 | Major Facilitator Superfamily | 51 | 198 | 5.0E-14 | IPR011701 |
| Pfam | PF07690 | Major Facilitator Superfamily | 236 | 466 | 1.0E-12 | IPR011701 |
| Pfam | PF01754 | A20-like zinc finger | 452 | 475 | 5.4E-12 | IPR002653 |
| Pfam | PF01428 | AN1-like Zinc finger | 536 | 572 | 2.8E-10 | IPR000058 |
| SUPERFAMILY | SSF103473 | MFS general substrate transporter | 51 | 414 | 3.79E-36 | IPR036259 |
| SUPERFAMILY | SSF118310 | AN1-like Zinc finger | 526 | 589 | 4.71E-25 | IPR035896 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 453 | 484 | 4.13E-11 | - |
| Gene3D | G3DSA:4.10.1110.10 | - | 511 | 591 | 1.7E-25 | IPR035896 |
| Gene3D | G3DSA:1.20.5.4770 | - | 438 | 510 | 3.7E-18 | - |
| Gene3D | G3DSA:1.20.1250.20 | MFS general substrate transporter like domains | 45 | 415 | 1.3E-34 | IPR036259 |
| SMART | SM00259 | A20_3 | 451 | 475 | 3.6E-7 | IPR002653 |
| SMART | SM00154 | AN1_Zf_4 | 536 | 573 | 4.1E-13 | IPR000058 |
| ProSiteProfiles | PS51036 | Zinc finger A20-type profile. | 448 | 482 | 9.884693 | IPR002653 |
| ProSiteProfiles | PS50850 | Major facilitator superfamily (MFS) profile. | 1 | 418 | 11.632708 | IPR020846 |
| ProSiteProfiles | PS51039 | Zinc finger AN1-type profile. | 533 | 576 | 12.529145 | IPR000058 |
| ProSitePatterns | PS00216 | Sugar transport proteins signature 1. | 68 | 84 | - | IPR005829 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 296 | 317 | 7.7E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 50 | 69 | 7.7E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 356 | 379 | 7.7E-5 | IPR001958 |
| PRINTS | PR01035 | Tetracycline resistance protein signature | 81 | 105 | 7.7E-5 | IPR001958 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 526 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G42210.1 | Major facilitator superfamily protein. | 0 |
| RefSeq | XP_011076924.1 | hippocampus abundant transcript-like protein 1 [Sesamum indicum] | 0 |
| Q6H754 | Zinc finger A20 and AN1 domain-containing stress-associated protein 5 OS=Oryza sativa subsp. japonica OX=39947 GN=SAP5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9T4B9 | hippocampus abundant transcript-like protein 1 OS=Sesamum indicum OX=4182 GN=LOC105161056 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology