Basic Information
Locus ID:
jg28267
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
PAPA-1-like conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 242581 | 245229 | + | jg28267 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.79 | 60,870.85 Da | 62.81 | 53.61 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04795 | PAPA-1-like conserved region | 402 | 487 | 5.7E-21 | IPR006880 |
| Pfam | PF04438 | HIT zinc finger | 503 | 534 | 3.9E-6 | IPR007529 |
| SMART | SM01406 | PAPA_1_2 | 402 | 487 | 2.0E-30 | IPR006880 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 303 | 319 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 395 | 456 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 79 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 35 | 52 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 350 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 296 | 459 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 169 | - | - |
| Coils | Coil | Coil | 440 | 460 | - | - |
| Coils | Coil | Coil | 398 | 428 | - | - |
Gene Ontology
Cellular Component:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G56460.1 | HIT zinc finger ;PAPA-1-like conserved region. | 0 |
| RefSeq | XP_011087489.1 | uncharacterized protein LOC105168956 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9TRV3 | uncharacterized protein LOC105168956 OS=Sesamum indicum OX=4182 GN=LOC105168956 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology