Basic Information
Locus ID:
jg28255
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
DNA helicase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr18 | 154783 | 164295 | - | jg28255 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 70,513.58 Da | 50.03 | 84.04 | -0.43 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 216 | 413 | 4.35036E-96 | - |
| CDD | cd18794 | SF2_C_RecQ | 414 | 547 | 1.89018E-64 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 224 | 392 | 6.7E-18 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 430 | 537 | 6.7E-16 | IPR001650 |
| Pfam | PF16124 | RecQ zinc-binding | 550 | 620 | 3.0E-12 | IPR032284 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 261 | 558 | 2.36E-51 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 179 | 413 | 1.6E-82 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 414 | 623 | 3.8E-59 | IPR027417 |
| SMART | SM00490 | helicmild6 | 456 | 538 | 1.6E-21 | IPR001650 |
| SMART | SM00487 | ultradead3 | 218 | 422 | 1.3E-27 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 216 | 622 | 3.5E-150 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 428 | 579 | 18.729919 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 230 | 406 | 21.222813 | IPR014001 |
| ProSitePatterns | PS00690 | DEAH-box subfamily ATP-dependent helicases signature. | 345 | 354 | - | IPR002464 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 193 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 122 | 141 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05740.1 | RECQ helicase l1. | 0 |
| RefSeq | XP_011087454.1 | ATP-dependent DNA helicase Q-like 1 isoform X1 [Sesamum indicum] | 0 |
| Q9FT74 | ATP-dependent DNA helicase Q-like 1 OS=Arabidopsis thaliana OX=3702 GN=RECQL1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9TP96 | ATP-dependent DNA helicase OS=Sesamum indicum OX=4182 GN=LOC105168938 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology