Basic Information
Locus ID:
jg28141
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Domain with 2 conserved Trp (W) residues
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 13833162 | 13840793 | + | jg28141 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 10.07 | 131,738.52 Da | 59.19 | 58.94 | -0.81 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00201 | WW | 23 | 51 | 0.00470976 | IPR001202 |
| CDD | cd18787 | SF2_C_DEAD | 756 | 885 | 1.93284E-61 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 768 | 876 | 2.2E-31 | IPR001650 |
| Pfam | PF00397 | WW domain | 22 | 52 | 3.2E-7 | IPR001202 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 561 | 731 | 6.1E-49 | IPR011545 |
| SUPERFAMILY | SSF51045 | WW domain | 14 | 53 | 6.68E-8 | IPR036020 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 608 | 892 | 1.96E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 747 | 917 | 6.0E-58 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 512 | 746 | 2.8E-88 | IPR027417 |
| Gene3D | G3DSA:2.20.70.10 | - | 16 | 54 | 1.2E-5 | - |
| SMART | SM00456 | ww_5 | 21 | 54 | 2.7E-7 | IPR001202 |
| SMART | SM00487 | ultradead3 | 556 | 759 | 1.2E-65 | IPR014001 |
| SMART | SM00490 | helicmild6 | 796 | 876 | 6.0E-34 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 568 | 742 | 31.087744 | IPR014001 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 537 | 565 | 11.200635 | IPR014014 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 771 | 915 | 25.367458 | IPR001650 |
| ProSiteProfiles | PS50020 | WW/rsp5/WWP domain profile. | 20 | 54 | 11.3293 | IPR001202 |
| ProSitePatterns | PS01159 | WW/rsp5/WWP domain signature. | 26 | 52 | - | IPR001202 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 688 | 696 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 53 | 71 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1007 | 1203 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1096 | 1111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 51 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1121 | 1140 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1070 | 1084 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1010 | 1052 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 232 | 262 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 108 | 150 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1053 | 1069 | - | - |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06480.1 | DEAD box RNA helicase family protein. | 0 |
| RefSeq | XP_011100703.1 | DEAD-box ATP-dependent RNA helicase 40 [Sesamum indicum] | 0 |
| Q9SQV1 | DEAD-box ATP-dependent RNA helicase 40 OS=Arabidopsis thaliana OX=3702 GN=RH40 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9UN12 | DEAD-box ATP-dependent RNA helicase 40 OS=Sesamum indicum OX=4182 GN=LOC105178848 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology