Basic Information
Locus ID:
jg2805
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr28 | 10317875 | 10327152 | + | jg2805 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.78 | 159,688.33 Da | 62.32 | 73.15 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 728 | 768 | 4.13523E-20 | - |
| Pfam | PF17123 | RING-like zinc finger | 808 | 837 | 1.1E-8 | IPR001841 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 1331 | 1418 | 2.3E-12 | IPR032838 |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 726 | 773 | 7.0E-11 | - |
| Pfam | PF00092 | von Willebrand factor type A domain | 964 | 1146 | 1.0E-17 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 960 | 1157 | 5.56E-26 | IPR036465 |
| SUPERFAMILY | SSF57850 | RING/U-box | 802 | 863 | 2.58E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 721 | 775 | 2.21E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 714 | 778 | 4.2E-13 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 779 | 857 | 1.6E-9 | IPR013083 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 964 | 1159 | 1.1E-36 | IPR036465 |
| SMART | SM00327 | VWA_4 | 962 | 1155 | 1.1E-19 | IPR002035 |
| SMART | SM00184 | ring_2 | 808 | 851 | 3.7E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 729 | 767 | 0.16 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 808 | 852 | 10.822189 | IPR001841 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 964 | 1166 | 14.285669 | IPR002035 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 729 | 768 | 10.704165 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 441 | 495 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 466 | 484 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 149 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 173 | 280 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 328 | 342 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 83 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 597 | 618 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 236 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 300 | 342 | - | - |
| Coils | Coil | Coil | 660 | 680 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_051119949.1 | uncharacterized protein LOC127243817 [Andrographis paniculata] | 0 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UIF4 | uncharacterized protein LOC105179586 OS=Sesamum indicum OX=4182 GN=LOC105179586 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology