Basic Information
Locus ID:
jg28046
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Hypoxia induced protein conserved region
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 13167981 | 13171503 | + | jg28046 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.22 | 43,939.49 Da | 38.89 | 93.59 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 75 | 107 | 1.6E-5 | IPR001680 |
| Pfam | PF04588 | Hypoxia induced protein conserved region | 316 | 365 | 2.0E-10 | IPR007667 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 46 | 274 | 4.84E-22 | IPR036322 |
| Gene3D | G3DSA:6.10.140.1320 | - | 318 | 376 | 5.2E-7 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 26 | 243 | 6.5E-21 | IPR015943 |
| SMART | SM00320 | WD40_4 | 68 | 107 | 2.5E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 23 | 63 | 200.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 75 | 108 | 10.442869 | - |
| ProSiteProfiles | PS51503 | HIG1 domain profile. | 290 | 381 | 20.574148 | IPR007667 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 75 | 108 | 12.546961 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06880.1 | Transducin/WD40 repeat-like superfamily protein. | 0 |
| RefSeq | XP_011090985.1 | putative E3 ubiquitin-protein ligase LIN-1 [Sesamum indicum] | 0 |
| TrEMBL | A0A2G9GBI5 | WD_REPEATS_REGION domain-containing protein OS=Handroanthus impetiginosus OX=429701 GN=CDL12_24836 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology