Basic Information
Locus ID:
jg27977
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
RING-variant domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 12626512 | 12632348 | + | jg27977 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 43,349.97 Da | 63.99 | 87.15 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 193 | 240 | 1.46833E-13 | - |
| Pfam | PF12906 | RING-variant domain | 193 | 239 | 1.0E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 189 | 242 | 6.18E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 177 | 247 | 1.5E-15 | IPR013083 |
| SMART | SM00744 | ringv_2 | 192 | 240 | 1.8E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 185 | 246 | 20.047735 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 162 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 168 | 186 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 19 | 35 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06330.4 | - | 0 |
| RefSeq | XP_011090868.1 | uncharacterized protein LOC105171447 isoform X1 [Sesamum indicum] | 0 |
| TrEMBL | A0A6I9TXE5 | uncharacterized protein LOC105171447 isoform X1 OS=Sesamum indicum OX=4182 GN=LOC105171447 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology