Basic Information
Locus ID:
jg27790
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Cupin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 10962854 | 10966092 | + | jg27790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.56 | 15,508.75 Da | 32.01 | 95.65 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00190 | Cupin | 2 | 103 | 1.7E-12 | IPR006045 |
| SUPERFAMILY | SSF51182 | RmlC-like cupins | 2 | 124 | 3.31E-15 | IPR011051 |
| Gene3D | G3DSA:2.60.120.10 | Jelly Rolls | 1 | 125 | 3.9E-31 | IPR014710 |
| SMART | SM00835 | Cupin_1_3 | 1 | 110 | 2.5E-4 | IPR006045 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 87 | 104 | 3.5E-7 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 65 | 83 | 3.5E-7 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 29 | 45 | 3.5E-7 | IPR006044 |
| PRINTS | PR00439 | 11-S seed storage protein family signature | 47 | 62 | 3.5E-7 | IPR006044 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G66430.1 | pfkB-like carbohydrate kinase family protein. | 0 |
| RefSeq | XP_011088121.2 | glutelin type-B 2-like [Sesamum indicum] | 0 |
| Q9C524 | Probable fructokinase-6, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g66430 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6I9TR06 | glutelin type-B 2-like OS=Sesamum indicum OX=4182 GN=LOC105169427 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology