Basic Information
Locus ID:
jg27685
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
F-box associated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 9499437 | 9500576 | - | jg27685 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 44,258.21 Da | 43.58 | 75.86 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00646 | F-box domain | 23 | 57 | 9.5E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 22 | 79 | 7.85E-13 | IPR036047 |
| SUPERFAMILY | SSF50965 | Galactose oxidase, central domain | 109 | 357 | 1.31E-6 | IPR011043 |
| Gene3D | G3DSA:1.20.1280.50 | - | 10 | 88 | 4.7E-8 | - |
| SMART | SM00256 | fbox_2 | 24 | 64 | 2.4E-8 | IPR001810 |
| TIGRFAM | TIGR01640 | F_box_assoc_1: F-box protein interaction domain | 118 | 339 | 6.9E-15 | IPR017451 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 18 | 65 | 9.603447 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17710.1 | F-box and associated interaction domains-containing protein. | 0 |
| RefSeq | XP_012833504.1 | PREDICTED: F-box/kelch-repeat protein At3g06240-like [Erythranthe guttata] | 0 |
| Q9LUM6 | F-box protein At3g17710 OS=Arabidopsis thaliana OX=3702 GN=At3g17710 PE=2 SV=1 | 0 | |
| TrEMBL | A0A830BLZ8 | Putative F-box protein at1g47790 OS=Phtheirospermum japonicum OX=374723 GN=PHJA_000669000 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27685 |
| Solanaceae | Lycium barbarum | 7 | gene-LOC132611547, gene-LOC132611549, gene-LOC132611550 ... |
| Solanaceae | Solanum chilense | 3 | SOLCI002051000, SOLCI002051100, SOLCI002060600 |