Basic Information
Locus ID:
jg27636
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
receptor protein kinase TMK1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 8008675 | 8013760 | + | jg27636 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 89,717.23 Da | 47.55 | 82.67 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 27 | 62 | 0.0038 | IPR013210 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 325 | 363 | 8.7E-4 | IPR013210 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 560 | 638 | 2.0E-12 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 386 | 427 | 1.4E-6 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 38 | 302 | 3.4E-47 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 559 | 697 | 2.23E-25 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 327 | 440 | 1.49E-18 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 27 | 324 | 3.9E-67 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 553 | 718 | 4.6E-33 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 326 | 451 | 1.8E-30 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 112 | 135 | 4.8 | IPR003591 |
| SMART | SM00220 | serkin_6 | 482 | 701 | 0.0053 | IPR000719 |
| SMART | SM00369 | LRR_typ_2 | 186 | 209 | 17.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 390 | 413 | 14.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 414 | 440 | 290.0 | IPR003591 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 369 | 701 | 11.919923 | IPR000719 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 513 | 552 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 763 | 794 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G23750.1 | Leucine-rich repeat protein kinase family protein. | 0 |
| RefSeq | XP_011101591.1 | receptor-like kinase TMK4 [Sesamum indicum] | 0 |
| Q9LK43 | Receptor-like kinase TMK4 OS=Arabidopsis thaliana OX=3702 GN=TMK4 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6I9UM62 | receptor-like kinase TMK4 OS=Sesamum indicum OX=4182 GN=LOC105179651 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology