Basic Information
Locus ID:
jg27361
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
USP8 dimerisation domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 2832399 | 2839350 | - | jg27361 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 56,685.56 Da | 53.51 | 82.00 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 345 | 495 | 3.31768E-93 | IPR044098 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 344 | 449 | 5.3E-18 | IPR000555 |
| Pfam | PF08969 | USP8 dimerisation domain | 14 | 105 | 1.9E-11 | IPR015063 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 345 | 476 | 3.27E-20 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 331 | 506 | 1.3E-61 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 6 | 130 | 1.2E-29 | - |
| SMART | SM00232 | pad1_6 | 345 | 473 | 1.7E-18 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 346 | 474 | 30.421467 | IPR037518 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_011096984.1 | AMSH-like ubiquitin thioesterase 1 [Sesamum indicum] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A830CHM7 | Amsh-like ubiquitin thioesterase 1 OS=Phtheirospermum japonicum OX=374723 GN=PHJA_001609900 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology