Basic Information
Locus ID:
jg27356
Species & Taxonomic ID:
Avicennia marina & 1381980
Genome Assembly:
GCA_013168755.1
Description:
Protein of unknown function (DUF295)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 2799291 | 2802111 | - | jg27356 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.53 | 46,092.79 Da | 49.39 | 74.88 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03478 | Protein of unknown function (DUF295) | 292 | 338 | 1.7E-5 | IPR005174 |
| Pfam | PF00646 | F-box domain | 31 | 67 | 3.2E-8 | IPR001810 |
| SUPERFAMILY | SSF81383 | F-box domain | 24 | 68 | 1.44E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 33 | 71 | 2.4E-7 | - |
| SMART | SM00256 | fbox_2 | 36 | 76 | 0.0042 | IPR001810 |
| ProSiteProfiles | PS50181 | F-box domain profile. | 30 | 83 | 9.868391 | IPR001810 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 343 | 365 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_051125185.1 | uncharacterized protein LOC127247401 [Andrographis paniculata] | 0 |
| TrEMBL | A0A5A7QDB0 | F-box family protein OS=Striga asiatica OX=4170 GN=STAS_19126 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 9 | jg27307, jg27308, jg27310, jg27311, jg27356, jg27357 ... |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.2019.V1.1 |
| Plantaginaceae | Plantago ovata | 13 | Pov_00000234, Pov_00000235, Pov_00000236, Pov_00006650 ... |
| Solanaceae | Solanum chilense | 1 | SOLCI006708900 |